See what our clients say about working with Bonami Software across 200+ projects for 18+ industries. EXPLORE NOW!
We don't just build software. We deliver results. EXPLORE NOW!
See why businesses choose Bonami Software for reliable, scalable solutions. EXPLORE NOW!
We turn ideas into scalable products with proven delivery across 18+ industries. EXPLORE NOW!
See what our clients say about working with Bonami Software across 200+ projects for 18+ industries. EXPLORE NOW!
We don't just build software. We deliver results. EXPLORE NOW!
See why businesses choose Bonami Software for reliable, scalable solutions. EXPLORE NOW!
We turn ideas into scalable products with proven delivery across 18+ industries. EXPLORE NOW!

PHI De-Identification for AI & Research

We de-identify PHI using Safe Harbor and Expert Determination — structured pipelines, clinical text NLP, limited datasets, and re-identification risk validation.

BrowserStack
Persistent
Yatra
Kellton
Jade Global
Optum
PokerBaazi
Walmart
Turing
BrowserStack
Persistent
Yatra
Kellton
Jade Global
Optum
PokerBaazi
Walmart
Turing

Book a De-Identification Consultation

Talk to our team about your dataset and analytics use case. We reply within 24 hours.

  • Your idea is 100% protected by our NDA
BrowserStack
Persistent
Yatra
Kellton
Jade Global
Optum
PokerBaazi
Walmart
Turing
BrowserStack
Persistent
Yatra
Kellton
Jade Global
Optum
PokerBaazi
Walmart
Turing

Trusted by startups and global leaders

BrowserStack
Persistent
Yatra
Kellton
Jade Global
Optum
PokerBaazi
Walmart
Turing
BrowserStack
Persistent
Yatra
Kellton
Jade Global
Optum
PokerBaazi
Walmart
Turing

What PHI De-Identification Services Cover

Healthcare data powers clinical research, analytics, and AI — but only when patient privacy is protected. De-identification removes patient-linking elements, creating datasets that retain clinical value while exiting HIPAA requirements entirely.

Safe Harbor De-Identification

Removes all 18 HIPAA-specified identifier categories — names, dates, SSNs, geographic data, device identifiers, biometric data, and more. Ages over 89 are aggregated; the organization must have no actual knowledge the remaining data could identify an individual.

Expert Determination Method

A qualified expert applies accepted statistical principles to establish re-identification risk is very small. More flexible than Safe Harbor — some identifiers may be retained if risk analysis supports it — but requires documented methodology and qualified expertise.

Structured Data De-Identification

Systematic transformation of identifier fields in relational databases, HL7, and FHIR data — generalizing dates to year-only, ages to ranges, and suppressing rare attribute combinations. Automated pipelines process large volumes consistently with documented provenance.

Clinical Text De-Identification

NLP techniques recognize and redact named entities in clinical notes, radiology reports, and discharge summaries — patient names, physician names, locations, and dates. The same identifier appears in many forms across clinical text, requiring trained models.

Limited Dataset Creation

Removes direct identifiers while retaining indirect ones — city, state, zip code, and dates — for research, public health, and operations under a Data Use Agreement. A practical middle ground between fully identified PHI and fully de-identified data.

Re-identification Risk Assessment

Demographic and clinical attribute combinations can re-identify individuals even after obvious identifiers are removed. Risk assessment evaluates how remaining data could be combined with other information — guiding suppression, generalization, or noise-addition decisions.

De-Identification Is the Mechanism That Unlocks Healthcare Data for AI and Research

Hover to explore the HIPAA safe harbors, technical methods, and risk considerations that govern PHI de-identification.

How PHI De-Identification Is Implemented

From data inventory to risk validation — every step produces compliance deliverables that make your dataset usable for AI and analytics.

Why De-Identification Matters for Healthcare AI and Analytics

HIPAA's constraints on identifiable PHI limit what you can do with patient data. De-identification removes those limits — click through to see what changes.

Book a De-Identification Consultation
AI Training
De-identified data can be used for model training and validation without consent restrictions or access controls — simplifying data governance for clinical AI programs.
No Consent
Properly de-identified data exits HIPAA entirely. No patient authorization, no IRB oversight — it's no longer PHI and can be used or shared freely.
Analytics
Build population health benchmarks and product intelligence from de-identified data that can be shared across health system customers — business models PHI's legal constraints would block.
Research
Organizations that produce well-documented de-identified datasets become valuable research partners — generating revenue and clinical validation from existing operations.
Risk Real
A re-identifiable dataset released as de-identified means HIPAA enforcement and civil liability. Documented methodology and risk validation is what separates safe harbor from exposure.
Documented
Expert Determination requires a documented expert analysis. Undocumented de-identification is not defensible if OCR or a data recipient ever questions the dataset's HIPAA status.

The 18 Safe Harbor Identifiers HIPAA Requires Every One to Be Removed

Under 45 CFR 164.514(b), Safe Harbor de-identification requires removal of eighteen specific identifier categories. After removal, the organization must have no actual knowledge the remaining information could identify any individual.

Personal IDs

Personal Identifiers

Direct identifiers that link data to a specific named individual.

  • Names
  • Social Security numbers
  • Certificate and license numbers
  • Account numbers
  • Health plan beneficiary numbers
  • Medical record numbers
Contact Info

Contact and Location Data

Geographic and contact information that can locate or reach an individual.

  • Geographic data smaller than state
  • Telephone numbers
  • Fax numbers
  • Email addresses
  • Web URLs
  • IP addresses
Dates

Dates and Age Data

Temporal data requires special handling — dates beyond year and ages over 89 are identifying.

  • All dates except year (for individuals under 90)
  • Ages over 89 aggregated into 90+
  • Admission and discharge dates
  • Birth and death dates
  • Date of service
  • Procedure dates
Device & Bio

Device and Biometric Identifiers

Physical and technical identifiers unique to devices or biological characteristics.

  • Device identifiers and serial numbers
  • Vehicle identifiers and serial numbers
  • Biometric identifiers (fingerprints, voiceprints)
  • Full-face photographs
  • Comparable images
  • Any unique identifying number or code
Expert Method

Expert Determination Flexibility

The Expert Determination method allows retention of some identifiers when risk analysis supports it.

  • Qualified expert required
  • Statistical risk analysis
  • Very small re-id risk required
  • Methods documented
  • More clinical richness retained
  • Expert analysis on file
Limited Sets

Limited Dataset Framework

Limited datasets remove direct identifiers but may retain indirect ones — usable under a Data Use Agreement.

  • Direct identifiers removed
  • City, state, zip retained
  • Dates retained
  • Data Use Agreement required
  • Research and public health use
  • Simpler than full authorization

The De-Identification Stack We Build With

NLP models, structured data pipelines, and risk validation tooling — selected to match the data formats, volumes, and compliance posture of clinical datasets used in healthcare AI and analytics.

spaCy NLP S spaCy NLP
AWS Comprehend Medical A AWS Comprehend Medical
Azure Health NLP A Azure Health NLP
Google Healthcare API G Google Healthcare API
BERT Clinical Models B BERT Clinical Models
Healthcare Data Has Enormous Value for Research and AI. De-Identification Is How You Access It.

Safe Harbor or Expert Determination, structured pipelines or clinical NLP — we build the framework that matches your data formats, use case, and compliance posture.

Book a De-Identification Consultation
AI Readiness

Award-Winning AI Development & Consulting

2025

100 Fastest Growth Companies

2025

Global Spring Winner

2025

Top App Development Company

2024

AWS Partner Network

2024

Google Cloud Partner

2025

Highly Rated on Trustpilot

2024

Verified Agency

2024

Top App Development Company

2024

ASSOCHAM Member

Frequently Asked Questions

[ 1 ]

Can de-identified data ever be re-identified?

Legally it is non-PHI, but re-identification is possible in practice — especially when combined with external data sources or rare demographic profiles. Implement contractual prohibitions and treat the data with care even outside HIPAA's requirements.

[ 2 ]

What is a Data Use Agreement and when is it required?

A DUA is required when a covered entity shares a limited dataset for research, public health, or healthcare operations. The recipient must agree to permitted uses only, no re-identification attempts, and safeguards against unauthorized disclosure. Simpler than full HIPAA authorization but still legally binding.

[ 3 ]

What is the difference between Safe Harbor and Expert Determination de-identification?

Safe Harbor removes all 18 identifier categories — simple to audit but strips more data than necessary. Expert Determination lets a qualified expert retain identifiers where risk analysis supports it, with the analysis documented on file. For AI training where richer clinical data matters, Expert Determination usually wins.

[ 4 ]

Does HIPAA de-identification apply to de-identified data shared with AI vendors?

Once de-identified under 45 CFR 164.514, the data is no longer PHI — no BAA required, shareable with AI vendors, usable in cloud training environments. Still, add contractual re-identification prohibitions and vet vendor data handling independently of HIPAA.

Global presence

Two offices. One team.

Hi, I'm ARIA. Ask me anything about Bonami's AI agents.